Index

_

__array__() (magni.utils.matrices.Matrix method) (magni.utils.matrices.MatrixCollection method) __call__() (magni.imaging.visualisation._ImageColourTracker method) __delete__() (magni.utils.types.ClassProperty method) __delitem__() (magni.utils.types.ReadOnlyDict method) __enter__() (magni.utils.multiprocessing._util.File method) __exit__() (magni.utils.multiprocessing._util.File method) __get__() (magni.utils.types.ClassProperty method) __getattribute__() (magni.utils.types.ReadOnlyDict method) __getitem__() (magni.cs.reconstruction._config.Configger method) (magni.utils.config.Configger method) (magni.utils.plotting._ColourCollection method) __len__() (magni.utils.config.Configger method) __set__() (magni.utils.types.ClassProperty method) __setitem__() (magni.utils.config.Configger method) (magni.utils.types.ReadOnlyDict method) _adjust_tau() (magni.cs.reconstruction.gamp.input_channel.GWS method) _attach_image_data() (in module magni.afm.io._data_attachment) _attach_spectroscopy_data() (in module magni.afm.io._data_attachment) _build_buffer() (in module magni.afm.io._object_building) _built_in_logit_solver() (in module magni.cs.phase_transition._analysis) _check_inheritance() (in module magni.utils.validation._generic) _check_keys() (in module magni.utils.validation._generic) _check_len() (in module magni.utils.validation._generic) _check_precision() (in module magni.utils.validation._numeric) _check_range() (in module magni.utils.validation._numeric) _check_shape() (in module magni.utils.validation._numeric) _check_type() (in module magni.utils.validation._generic) (in module magni.utils.validation._numeric) _check_value() (in module magni.utils.validation._generic) _clean_vars() (in module magni.cs.reconstruction.gamp._algorithm) _ColourCollection (class in magni.utils.plotting) _convert_image_data() (in module magni.afm.io._stream_conversion) _convert_parameter_value() (in module magni.afm.io._stream_conversion) _convert_spectroscopy_data() (in module magni.afm.io._stream_conversion) _estimate_PT() (in module magni.cs.phase_transition._analysis) _examine_var() (in module magni.utils.validation._numeric)

_expand_buffers() (in module magni.afm.io._object_building) _funcs (magni.utils.config.Configger attribute) _generate_grid_points() (in module magni.afm.io._object_building) _generate_implicit_chunks() (in module magni.afm.io._object_building) _get_amp_initialisation() (in module magni.cs.reconstruction.amp._algorithm) _get_gamp_initialisation() (in module magni.cs.reconstruction.gamp._algorithm) _get_methods() (in module magni.cs.reconstruction.it._util) _get_num_threads() (in module magni.utils.multiprocessing._processing) _get_operators() (in module magni.cs.reconstruction.it._util) _get_tasks() (in module magni.utils.multiprocessing._processing) _handle_format_inconsistency() (in module magni.afm.io._data_attachment) (in module magni.afm.io._object_building) _handle_ticklabels() (in module magni.imaging.visualisation) _ImageColourTracker (class in magni.imaging.visualisation) _instantiate_spectroscopy() (in module magni.afm.io._util) _instantiate_spectroscopy_buffer() (in module magni.afm.io._util) _line_flatten_tilt() (in module magni.imaging.preprocessing) _map_using_futures() (in module magni.utils.multiprocessing._processing) _map_using_mppool() (in module magni.utils.multiprocessing._processing) _npcr() (magni.cs.reconstruction.gamp.input_channel.IIDL method) _plane_flatten_tilt() (in module magni.imaging.preprocessing) _plot_extra_curves() (in module magni.cs.phase_transition.plotting) _plot_theoretical_l1() (in module magni.cs.phase_transition.plotting) _process_init() (in module magni.utils.multiprocessing._processing) _process_worker() (in module magni.utils.multiprocessing._processing) _recursive_annotation_read() (in module magni.reproducibility.io) _save_output() (in module magni.imaging.dictionaries.analysis) _set_num_threads() (in module magni.utils.multiprocessing._processing) _simulate() (in module magni.cs.phase_transition._simulation) _sklearn_logit_solver() (in module magni.cs.phase_transition._analysis) _validate_level() (in module magni.utils.validation._levels) _validate_transform_bwd() (in module magni.imaging.dictionaries._fastops) _validate_transform_fwd() (in module magni.imaging.dictionaries._fastops)

A

A (magni.utils.matrices.Matrix attribute) (magni.utils.matrices.MatrixCollection attribute) (magni.utils.matrices.Separable2DTransform attribute) analyse() (in module magni.afm.reconstruction) annotate_database() (in module magni.reproducibility.io) apply_clipping (magni.afm.types.image.Buffer attribute), [1]

attach_data() (in module magni.afm.io._data_attachment) attrs (magni.afm.types._util.BaseClass attribute), [1] AWGN (class in magni.cs.reconstruction.gamp.output_channel)

B

BaseClass (class in magni.afm.types._util) bounds (magni.utils.validation.types.MatrixBase attribute), [1] Buffer (class in magni.afm.types.image) (class in magni.afm.types.spectroscopy)

buffers (magni.afm.types._util.File attribute), [1] build_object() (in module magni.afm.io._object_building)

C

calculate_coherence() (in module magni.cs.indicators) calculate_far() (in module magni.cs.reconstruction.it._threshold) calculate_mse() (in module magni.imaging.evaluation) calculate_mutual_coherence() (in module magni.cs.indicators) calculate_psnr() (in module magni.imaging.evaluation) calculate_relative_energy() (in module magni.cs.indicators) calculate_retained_energy() (in module magni.imaging.evaluation) chase_database() (in module magni.reproducibility.io) Chunk (class in magni.afm.types.spectroscopy) chunks (magni.afm.types.spectroscopy.Point attribute), [1] ClassProperty (class in magni.utils.types) coefficients (magni.imaging.domains.MultiDomainImage attribute)

compute() (magni.cs.reconstruction.amp.stop_criterion.MSEConvergence method) (magni.cs.reconstruction.amp.stop_criterion.NormalisedMSEConvergence method) (magni.cs.reconstruction.amp.stop_criterion.Residual method) (magni.cs.reconstruction.amp.stop_criterion.ResidualMeasurementsRatio method) (magni.cs.reconstruction.amp.stop_criterion.ValidatedStopCriterion method) (magni.cs.reconstruction.gamp.input_channel.GWS method) (magni.cs.reconstruction.gamp.input_channel.IIDBG method) (magni.cs.reconstruction.gamp.input_channel.IIDG method) (magni.cs.reconstruction.gamp.input_channel.IIDL method) (magni.cs.reconstruction.gamp.input_channel.IIDsGB method) (magni.cs.reconstruction.gamp.input_channel.ValidatedMMSEInputChannel method) (magni.cs.reconstruction.gamp.output_channel.AWGN method) (magni.cs.reconstruction.gamp.output_channel.ValidatedMMSEOutputChannel method) (magni.cs.reconstruction.gamp.stop_criterion.MSEConvergence method) (magni.cs.reconstruction.gamp.stop_criterion.NormalisedMSEConvergence method) (magni.cs.reconstruction.gamp.stop_criterion.Residual method) (magni.cs.reconstruction.gamp.stop_criterion.ResidualMeasurementsRatio method) (magni.cs.reconstruction.gamp.stop_criterion.ValidatedStopCriterion method) (magni.utils.validation.types.MMSEInputChannel method) (magni.utils.validation.types.MMSEOutputChannel method) (magni.utils.validation.types.StopCriterion method) compute_deriv_threshold() (magni.cs.reconstruction.amp.threshold_operator.SoftThreshold method) (magni.cs.reconstruction.amp.threshold_operator.ValidatedThresholdOperator method) (magni.utils.validation.types.ThresholdOperator method) compute_threshold() (magni.cs.reconstruction.amp.threshold_operator.SoftThreshold method) (magni.cs.reconstruction.amp.threshold_operator.ValidatedThresholdOperator method) (magni.utils.validation.types.ThresholdOperator method) compute_Z() (magni.cs.reconstruction.gamp.input_channel.IIDG method) (magni.cs.reconstruction.gamp.input_channel.IIDL method) (magni.cs.reconstruction.gamp.input_channel.ValidatedBasicMMSEInputChannel method) Configger (class in magni.cs.reconstruction._config) (class in magni.utils.config) conj() (magni.utils.matrices.Matrix method) (magni.utils.matrices.MatrixCollection method) (magni.utils.matrices.Separable2DTransform method) construct_measurement_matrix() (in module magni.imaging.measurements._matrices) construct_pixel_mask() (in module magni.imaging.measurements._util) convert_stream() (in module magni.afm.io._stream_conversion) create() (in module magni.cs.phase_transition._backup) create_database() (in module magni.reproducibility.io)

D

data (magni.afm.types.image.Buffer attribute), [1] (magni.afm.types.spectroscopy.Buffer attribute), [1] (magni.afm.types.spectroscopy.Chunk attribute), [1] dct2() (in module magni.imaging.dictionaries._fastops) decorate_validation() (in module magni.utils.validation._util) determine() (in module magni.cs.phase_transition._util) detilt() (in module magni.imaging.preprocessing)

dft2() (in module magni.imaging.dictionaries._fastops) disable_validation() (in module magni.utils.validation._util) dot() (magni.utils.matrices.Matrix method) (magni.utils.matrices.MatrixCollection method) (magni.utils.matrices.Separable2DTransform method) (magni.utils.matrices.SumApproximationMatrix method) double_mirror() (in module magni.imaging._util) dtype (magni.utils.validation.types.MatrixBase attribute), [1]

E

enable_validate_once() (in module magni.utils.validation._util)

F

File (class in magni.afm.types._util) (class in magni.utils.multiprocessing._util) FileCollection (class in magni.afm.types._util)

files (magni.afm.types._util.FileCollection attribute), [1]

G

generate_matrix() (in module magni.cs.phase_transition._data) generate_noise() (in module magni.cs.phase_transition._data) generate_vector() (in module magni.cs.phase_transition._data) get() (in module magni.cs.phase_transition._backup) (magni.utils.config.Configger method) get_buffer() (magni.afm.types._util.File method) get_conda_info() (in module magni.reproducibility._annotation) get_datetime() (in module magni.reproducibility._annotation) get_DCT() (in module magni.imaging.dictionaries._matrices) get_DCT_transform_matrix() (in module magni.imaging.dictionaries._mtx1D) get_DFT() (in module magni.imaging.dictionaries._matrices) get_DFT_transform_matrix() (in module magni.imaging.dictionaries._mtx1D) get_em_bg_amp_initialisation() (in module magni.cs.reconstruction.gamp.channel_initialisation) get_EM_element() (magni.cs.reconstruction.gamp.input_channel.IIDG method) (magni.cs.reconstruction.gamp.input_channel.IIDL method) (magni.cs.reconstruction.gamp.input_channel.ValidatedBasicMMSEInputChannel method) get_file_hashes() (in module magni.reproducibility._annotation) get_function_handle() (in module magni.cs.reconstruction.it._step_size) (in module magni.cs.reconstruction.it._stop_criterion) (in module magni.cs.reconstruction.it._threshold) (in module magni.cs.reconstruction.it._threshold_operators) (in module magni.cs.reconstruction.sl0._L_start) (in module magni.cs.reconstruction.sl0._L_update) (in module magni.cs.reconstruction.sl0._mu_start) (in module magni.cs.reconstruction.sl0._mu_update) (in module magni.cs.reconstruction.sl0._sigma_start) (in module magni.imaging.dictionaries.utils)

get_git_revision() (in module magni.reproducibility._annotation) get_inscribed_masks() (in module magni.imaging._util) get_magni_config() (in module magni.reproducibility._annotation) get_magni_info() (in module magni.reproducibility._annotation) get_main_file_name() (in module magni.reproducibility._chase) get_main_file_source() (in module magni.reproducibility._chase) get_main_source() (in module magni.reproducibility._chase) get_platform_info() (in module magni.reproducibility._annotation) get_reconstructions() (in module magni.imaging.dictionaries.analysis) get_stack_trace() (in module magni.reproducibility._chase) get_transform_names() (in module magni.imaging.dictionaries.utils) get_var() (in module magni.utils.validation._util) Grid (class in magni.afm.types.spectroscopy) GWS (class in magni.cs.reconstruction.gamp.input_channel)

I

idct2() (in module magni.imaging.dictionaries._fastops) idft2() (in module magni.imaging.dictionaries._fastops) IIDBG (class in magni.cs.reconstruction.gamp.input_channel) IIDG (class in magni.cs.reconstruction.gamp.input_channel) IIDL (class in magni.cs.reconstruction.gamp.input_channel) IIDsGB (class in magni.cs.reconstruction.gamp.input_channel)

Image (class in magni.afm.types.image) image (magni.imaging.domains.MultiDomainImage attribute) imshow() (in module magni.imaging.visualisation) imsubplot() (in module magni.imaging.visualisation) items() (magni.utils.config.Configger method)

K

keys() (magni.utils.config.Configger method)

L

lissajous_sample_image() (in module magni.imaging.measurements._lissajous) lissajous_sample_surface() (in module magni.imaging.measurements._lissajous)

load_phase_transition() (in module magni.cs.phase_transition.io)

M

magni (module) magni.afm (module) magni.afm._config (module) magni.afm.io (module) magni.afm.io._data_attachment (module) magni.afm.io._object_building (module) magni.afm.io._stream_conversion (module) magni.afm.io._util (module) magni.afm.reconstruction (module) magni.afm.types (module) magni.afm.types._util (module) magni.afm.types.image (module) magni.afm.types.spectroscopy (module) magni.cs (module) magni.cs.indicators (module) magni.cs.phase_transition (module) magni.cs.phase_transition._analysis (module) magni.cs.phase_transition._backup (module) magni.cs.phase_transition._config (module) magni.cs.phase_transition._data (module) magni.cs.phase_transition._simulation (module) magni.cs.phase_transition._util (module) magni.cs.phase_transition.io (module) magni.cs.phase_transition.plotting (module) magni.cs.reconstruction (module) magni.cs.reconstruction._config (module) magni.cs.reconstruction.amp (module) magni.cs.reconstruction.amp._algorithm (module) magni.cs.reconstruction.amp._config (module) magni.cs.reconstruction.amp.stop_criterion (module) magni.cs.reconstruction.amp.threshold_operator (module) magni.cs.reconstruction.amp.util (module) magni.cs.reconstruction.gamp (module) magni.cs.reconstruction.gamp._algorithm (module) magni.cs.reconstruction.gamp._config (module) magni.cs.reconstruction.gamp.channel_initialisation (module) magni.cs.reconstruction.gamp.input_channel (module) magni.cs.reconstruction.gamp.output_channel (module) magni.cs.reconstruction.gamp.stop_criterion (module) magni.cs.reconstruction.iht (module) magni.cs.reconstruction.iht._config (module) magni.cs.reconstruction.it (module) magni.cs.reconstruction.it._algorithm (module) magni.cs.reconstruction.it._config (module) magni.cs.reconstruction.it._step_size (module) magni.cs.reconstruction.it._stop_criterion (module) magni.cs.reconstruction.it._threshold (module) magni.cs.reconstruction.it._threshold_operators (module) magni.cs.reconstruction.it._util (module) magni.cs.reconstruction.sl0 (module) magni.cs.reconstruction.sl0._algorithm (module) magni.cs.reconstruction.sl0._config (module) magni.cs.reconstruction.sl0._L_start (module) magni.cs.reconstruction.sl0._L_update (module) magni.cs.reconstruction.sl0._mu_start (module) magni.cs.reconstruction.sl0._mu_update (module) magni.cs.reconstruction.sl0._sigma_start (module)

magni.imaging (module) magni.imaging._util (module) magni.imaging.dictionaries (module) magni.imaging.dictionaries._fastops (module) magni.imaging.dictionaries._matrices (module) magni.imaging.dictionaries._mtx1D (module) magni.imaging.dictionaries._visualisations (module) magni.imaging.dictionaries.analysis (module) magni.imaging.dictionaries.utils (module) magni.imaging.domains (module) magni.imaging.evaluation (module) magni.imaging.measurements (module) magni.imaging.measurements._lissajous (module) magni.imaging.measurements._matrices (module) magni.imaging.measurements._random_line (module) magni.imaging.measurements._spiral (module) magni.imaging.measurements._square_spiral (module) magni.imaging.measurements._uniform_line (module) magni.imaging.measurements._uniform_rotated_line (module) magni.imaging.measurements._util (module) magni.imaging.measurements._visualisation (module) magni.imaging.measurements._zigzag (module) magni.imaging.preprocessing (module) magni.imaging.visualisation (module) magni.reproducibility (module) magni.reproducibility._annotation (module) magni.reproducibility._chase (module) magni.reproducibility.data (module) magni.reproducibility.io (module) magni.utils (module) magni.utils._util (module) magni.utils.config (module) magni.utils.matrices (module) magni.utils.multiprocessing (module) magni.utils.multiprocessing._config (module) magni.utils.multiprocessing._processing (module) magni.utils.multiprocessing._util (module) magni.utils.plotting (module) magni.utils.types (module) magni.utils.validation (module) magni.utils.validation._generic (module) magni.utils.validation._levels (module) magni.utils.validation._numeric (module) magni.utils.validation._util (module) magni.utils.validation.types (module) mask_img_from_coords() (in module magni.imaging.visualisation) mat2vec() (in module magni.imaging._util) Matrix (class in magni.utils.matrices) matrix_state (magni.utils.matrices.Matrix attribute) (magni.utils.matrices.MatrixCollection attribute) (magni.utils.matrices.SRM attribute) (magni.utils.matrices.Separable2DTransform attribute) MatrixBase (class in magni.utils.validation.types) MatrixCollection (class in magni.utils.matrices) measurements (magni.imaging.domains.MultiDomainImage attribute) MMSEInputChannel (class in magni.utils.validation.types) MMSEOutputChannel (class in magni.utils.validation.types) MSEConvergence (class in magni.cs.reconstruction.amp.stop_criterion) (class in magni.cs.reconstruction.gamp.stop_criterion) MultiDomainImage (class in magni.imaging.domains)

N

norm() (in module magni.utils.matrices)

NormalisedMSEConvergence (class in magni.cs.reconstruction.amp.stop_criterion) (class in magni.cs.reconstruction.gamp.stop_criterion)

P

params (magni.afm.types._util.BaseClass attribute), [1] paths (magni.afm.types._util.FileCollection attribute), [1] plot_pattern() (in module magni.imaging.measurements._visualisation) plot_phase_transition_colormap() (in module magni.cs.phase_transition.plotting) plot_phase_transition_computation_times() (in module magni.cs.phase_transition.plotting) plot_phase_transitions() (in module magni.cs.phase_transition.plotting)

plot_pixel_mask() (in module magni.imaging.measurements._visualisation) Point (class in magni.afm.types.spectroscopy) points (magni.afm.types.spectroscopy.Grid attribute), [1] process() (in module magni.utils.multiprocessing._processing) property (magni.cs.reconstruction._config.Configger attribute)

R

random_line_sample_image() (in module magni.imaging.measurements._random_line) random_line_sample_surface() (in module magni.imaging.measurements._random_line) read_annotations() (in module magni.reproducibility.io) read_chases() (in module magni.reproducibility.io) read_mi_file() (in module magni.afm.io._util) ReadOnlyDict (class in magni.utils.types) reconstruct() (in module magni.afm.reconstruction) remove_annotations() (in module magni.reproducibility.io)

remove_chases() (in module magni.reproducibility.io) report() (in module magni.utils.validation._util) reset() (magni.utils.config.Configger method) Residual (class in magni.cs.reconstruction.amp.stop_criterion) (class in magni.cs.reconstruction.gamp.stop_criterion) ResidualMeasurementsRatio (class in magni.cs.reconstruction.amp.stop_criterion) (class in magni.cs.reconstruction.gamp.stop_criterion) rho_se() (in module magni.cs.reconstruction.gamp.channel_initialisation) run() (in module magni.cs.phase_transition._analysis) (in module magni.cs.phase_transition._simulation) (in module magni.cs.reconstruction.amp._algorithm) (in module magni.cs.reconstruction.gamp._algorithm) (in module magni.cs.reconstruction.iht) (in module magni.cs.reconstruction.it._algorithm) (in module magni.cs.reconstruction.sl0._algorithm)

S

Separable2DTransform (class in magni.utils.matrices) set() (in module magni.cs.phase_transition._backup) (magni.utils.config.Configger method) setup_matplotlib() (in module magni.utils.plotting) shape (magni.utils.matrices.MatrixCollection attribute) (magni.utils.validation.types.MatrixBase attribute), [1] shift_mean() (in module magni.imaging.visualisation) show_coefficient_histogram() (in module magni.imaging.dictionaries.analysis) show_psnr_energy_rolloff() (in module magni.imaging.dictionaries.analysis) show_reconstructions() (in module magni.imaging.dictionaries.analysis) show_sorted_coefficients() (in module magni.imaging.dictionaries.analysis) show_transform_coefficients() (in module magni.imaging.dictionaries.analysis) show_transform_quantiles() (in module magni.imaging.dictionaries.analysis) SoftThreshold (class in magni.cs.reconstruction.amp.threshold_operator)

Spectroscopy (class in magni.afm.types.spectroscopy) spiral_sample_image() (in module magni.imaging.measurements._spiral) spiral_sample_surface() (in module magni.imaging.measurements._spiral) split_path() (in module magni.utils._util) square_spiral_sample_image() (in module magni.imaging.measurements._square_spiral) square_spiral_sample_surface() (in module magni.imaging.measurements._square_spiral) SRM (class in magni.utils.matrices) StopCriterion (class in magni.utils.validation.types) stretch_image() (in module magni.imaging.visualisation) SumApproximationMatrix (class in magni.utils.matrices) sweep (magni.afm.types.spectroscopy.Chunk attribute)

T

T (magni.utils.matrices.Matrix attribute) (magni.utils.matrices.MatrixCollection attribute) (magni.utils.matrices.Separable2DTransform attribute) theta_mm() (in module magni.cs.reconstruction.amp.util) threshold_hard() (in module magni.cs.reconstruction.it._threshold_operators) threshold_none() (in module magni.cs.reconstruction.it._threshold_operators) threshold_soft() (in module magni.cs.reconstruction.it._threshold_operators)

threshold_weighted_hard() (in module magni.cs.reconstruction.it._threshold_operators) threshold_weighted_soft() (in module magni.cs.reconstruction.it._threshold_operators) ThresholdOperator (class in magni.utils.validation.types) time (magni.afm.types.spectroscopy.Chunk attribute)

U

uniform_line_sample_image() (in module magni.imaging.measurements._uniform_line) uniform_line_sample_surface() (in module magni.imaging.measurements._uniform_line) uniform_rotated_line_sample_image() (in module magni.imaging.measurements._uniform_rotated_line) uniform_rotated_line_sample_surface() (in module magni.imaging.measurements._uniform_rotated_line)

unique_pixels() (in module magni.imaging.measurements._util) update() (magni.utils.config.Configger method) update_threshold_level() (magni.cs.reconstruction.amp.threshold_operator.SoftThreshold method) (magni.cs.reconstruction.amp.threshold_operator.ValidatedThresholdOperator method) (magni.utils.validation.types.ThresholdOperator method)

V

validate_generic() (in module magni.utils.validation._generic) validate_levels() (in module magni.utils.validation._levels) validate_numeric() (in module magni.utils.validation._numeric) validate_once() (in module magni.utils.validation._util) ValidatedBasicMMSEInputChannel (class in magni.cs.reconstruction.gamp.input_channel) ValidatedMMSEInputChannel (class in magni.cs.reconstruction.gamp.input_channel) ValidatedMMSEOutputChannel (class in magni.cs.reconstruction.gamp.output_channel)

ValidatedStopCriterion (class in magni.cs.reconstruction.amp.stop_criterion) (class in magni.cs.reconstruction.gamp.stop_criterion) ValidatedThresholdOperator (class in magni.cs.reconstruction.amp.threshold_operator) values() (magni.utils.config.Configger method) vec2mat() (in module magni.imaging._util) visualise_DCT() (in module magni.imaging.dictionaries._visualisations) visualise_DFT() (in module magni.imaging.dictionaries._visualisations)

W

wrap_calculate_using_adaptive() (in module magni.cs.reconstruction.it._step_size) wrap_calculate_using_far() (in module magni.cs.reconstruction.it._threshold) wrap_calculate_using_fixed() (in module magni.cs.reconstruction.it._step_size) (in module magni.cs.reconstruction.it._threshold) (in module magni.cs.reconstruction.sl0._L_start) (in module magni.cs.reconstruction.sl0._L_update) (in module magni.cs.reconstruction.sl0._mu_start) (in module magni.cs.reconstruction.sl0._mu_update) (in module magni.cs.reconstruction.sl0._sigma_start) wrap_calculate_using_geometric() (in module magni.cs.reconstruction.sl0._L_start) (in module magni.cs.reconstruction.sl0._L_update) wrap_calculate_using_mse_convergence() (in module magni.cs.reconstruction.it._stop_criterion) wrap_calculate_using_normalised_mse_convergence() (in module magni.cs.reconstruction.it._stop_criterion)

wrap_calculate_using_reciprocal() (in module magni.cs.reconstruction.sl0._sigma_start) wrap_calculate_using_residual() (in module magni.cs.reconstruction.it._stop_criterion) wrap_calculate_using_residual_measurements_ratio() (in module magni.cs.reconstruction.it._stop_criterion) wrap_calculate_using_step() (in module magni.cs.reconstruction.sl0._mu_start) (in module magni.cs.reconstruction.sl0._mu_update) write_custom_annotation() (in module magni.reproducibility.io)

Z

zigzag_sample_image() (in module magni.imaging.measurements._zigzag)

zigzag_sample_surface() (in module magni.imaging.measurements._zigzag)